The original LiteLoader version is completely borked for me in 1.9.4, and not many servers are on 1.9 (this is basically only for Funcraft), so only porting important bug/crash fixes.
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Initial 1.9.4 release
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Backported this commit (& a bit of this one) to prevent NullPointerExceptions on empty chunks
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Now saving empty chunks
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Version number normalized to 1.0.0-1.9.4